http://www.sys-bio.org/sbwwiki/ 2010-09-09T13:28:37-07:00 http://www.sys-bio.org/sbwwiki/ http://www.sys-bio.org/sbwwiki/lib/images/favicon.ico text/html 2010-05-12T15:18:17-07:00 Frank Bergmann http://www.sys-bio.org/sbwwiki/sbw/stats Every once in a while it is interesting to see what our current download statistics are. With the project split into several sourceforge projects, it might be interesting to collect this information here: Jdesigner SF project SBW SF project text/html 2007-01-10T23:26:14-07:00 http://www.sys-bio.org/sbwwiki/sbw/simdriver The Simulation Tool is one of the main entry points into SBW. The tool has the following features: * Time course simulation with load, simulate and reset. Set time start, end and number of points. Select X and Y axis variables, including concentrations, fluxes, rates of changes, volumes, parameters and time. * Continuous time course with panning graph. * Steady State, compute and reset with optional pre-simulation. Compute eigenvalues as well as steady state values for concentration, flu… text/html 2007-02-01T03:16:17-07:00 http://www.sys-bio.org/sbwwiki/sbw/welcome Availability We are committed to bringing the same applications to all supported operating systems, be it Windows, OS X or Linux. We are making great progress on this, here some screenshots. SBW Modules There is a great variety of SBW modules available: text/html 2009-06-08T15:35:03-07:00 Frank Bergmann http://www.sys-bio.org/sbwwiki/sbw/platforms For the longest time SBW focussed mainly on the Windows operating systems. However we do realize that many scientists and researchers in the field of computational and systems biology are working with OS X and Linux operating systems. For this reason we are renewing our efforts in porting some of our most popular applications to those operating systems with a complete suite of tools ready by the end of the year. text/html 2008-08-04T01:28:06-07:00 Frank Bergmann http://www.sys-bio.org/sbwwiki/sbw/copasi Copasi is a software application for simulation and analysis of biochemical networks. It has significant capabilities for parameter estimation. With the release of the open source version of Copasi, it is possible to make Copasi SBW enabled. This means it is possible for example to move directly from tools such as celldesigner, JDesigner or JarnacLite to Copasi. Moreover it is also possible to move models from Copasi to any other SBW enabled tool, for example Oscill8. text/html 2008-05-17T10:43:34-07:00 Frank Bergmann http://www.sys-bio.org/sbwwiki/sbw/matlab The SBW-Matlab Interface is exactly what it says it is, it permits Matlab to call out to SBW modules and allows users to write Matlab functions so that other SBW modules can call Matlab. The use of Matlab functions once packaged as SBW modules does not require Matlab to be installed on the client machine. Thus developers can write Matlab based modules and easily distribute them to other users even though the user may not have Matlab installed. This took kit was developed by Cameron Wellock as pa… text/html 2008-04-29T12:45:45-07:00 Frank Bergmann http://www.sys-bio.org/sbwwiki/sbw/sbml C# Bindings now in official libsbml release The libsbml C# bindings are now included with the official libsbml release. So the code below should be seen only as example. Please download the official version from the SBML Homepage libsbml C# bindings 30th Apr. Update: updated prototype, added memory handling, OStreams, inlining of enums, replaced uints in signatures with int's