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Opening: Overview (Cedar Room)
9:00 – 9:15am : Herbert Sauro, Welcome and Introduction
9:15 – 9:45am : Raik Grüenberg, Summary of BioBrick technical standards and definitions
9:45 – 10:30am : Discussion
10:30 – 10:45am : Break
Session 1: Experimental standards (Cedar Room)
10:45 – 11:05am : Kim de Mora (speaking for Jason Kelly), Measurement kit for BioBrick promoters and ribosome binding sites
11:05 – 11:25am : John Cumbers, Dual Luciferase Assay for Promoters (DLAP)
11:25 – 11:45am : J. Christopher Anderson, A Roadmap for Quantitative Standards
11:45 – 12:30pm : Discussion
12:30 – 1:30pm : Lunch (Dining Room)
Session 2: Organizing, storing, and sharing biological parts (Cedar Room)
1:30 – 1:50pm : Mac Cowell and Jason Morrison, Bricklet: an open software application for storing, sharing, and finding standardized biological parts
1:50 – 2:10pm : Raik Grüenberg, BrickIt: An open source solution for local BioBrick management
2:10 – 2:30pm : Jean Peccoud, From registries of biological parts to IDE of genetic systems
2:30 – 3:00pm : Discussion
3:00 – 3:15pm : Break
Session 3: Computer languages for modeling synthetic biology, Part 1 (Cedar Room)
3:15 – 3:35pm : Ralph Santos, PICA (Part Interaction and Composition Assertion): A Proposal for a Data Model and Annotation Standard for Biological Parts
3:35 – 3:55pm : Andrew Miller, CellML for modeling synthetic biology
3:55 – 4:15pm : Michael Pedersen, LBS: a language of biological systems
4:15 – 4:35pm : Vincent Rouilly, Describing and simulating BioBrick Assemblies with Petri Nets
4:35 – 5:05pm : Discussion
5:05 - 5:30pm : Registry Tools “Birds of a Feather” Session (organized by Mac Cowell and Jason Morrison)
5:30 – 6:30pm : Poster Session and Open Bar
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Session 4: Computer languages for modeling synthetic biology, Part 2 (Cedar Room)
8:30 – 8:50am : Mike Hucka, The SBML experience of developing a popular format
8:50 – 9:10am : Mike Hucka, Modular models in SBML Level 3: Update on progress
9:10 – 9:30am : Michael Blinov, Describing rule-based models
9:30 – 9:50am : Lucian Smith, Antimony: A Human Writable Model Definition Language
9:50 – 10:20am : Discussion
10:20 – 10:35am : Break
Session 5: Software tools for synthetic biology (Cedar Room)
10:35 – 10:55am : Sarah Richardson, BioStudio: Computer Assisted Design of Synthetic Genomes
10:55 – 11:15am : Guillermo Rodrigo, Automatic Design of Biological Networks using Standardized Genetic Part Models
11:15 – 11:35am : Jonathan Goler, BioJade: a comprehensive, extensible design and simulation platform for synthetic biology
11:35 – 11:55am : Deepak Chandran, Athena: a design tool for construction and simulation of modular biological systems
11:55 – 12:30pm : Discussion
12:30 – 1:30pm : Lunch (Dining Room)
Wrap-up (Cedar Room)
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