Computational Systems Biology
Sauro Lab
University of Washington
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What is SBW 
Research Impact 
Published Papers 
Lab Members 
Available Positions 
CSB Links 
Courses 
 
 
 
Software Downloads:

1. SBW
2. JDesigner
3. Jarnac
4. WinSCAMP
5. Matlab Interface
6. Optimization
6. Bifurcation
 
maintained by Frank Bergmann
 
 
 
 

Lab Members

Current Members

Herbert M. Sauro
website | email: hsauro@u.washington.edu

Group Leader
hsauro.jpg
Frank T. Bergmann
website | email

Development of a 3D reaction-diffusion simulator and Systems Biology Workbench Developer. Primary developer of SBW.
Kyung Hyuk Kim
website | kkim@u.washington.edu

Post-doc: Stochastic control analysis for biological networks: an extension of metabolic control analysis, Modularity of stochastic gene regulartory networks
Sean Sleight
website | email: sleight@u.washington.edu

Post-doc: Synthetic Biology
Lucian Smith
website | email: lpsmith@u.washington.edu

Research Consultant: Computational Systems Biology development
Deepak Chandran
website | email

Graduate Student: Network Evolution, Modularity in Biological Systems, Standards for Synthetic Biology
Anastasia Deckard
website | email

Student: Network Evolution Project
Alex Bratt
website | email

Bioengineering undergrad: Image processing and simulated reaction networks.

Past Members

Michael Allain
website | email

Student: Website maintenance and development of software tutorials.
Sri Paladugu
website | email

Graduate Student: Systems Biology Workbench Developer. Evolution of signaling networks.
V. Ravi Rao
website | email

Postdoc: Modeling Large Prokaryotic Systems. Developing software capable of modeling large systems.
Vijay Chickarmane
website | email

Senior Postdoc: BioSPICE Project member. Responsible for developing the SBW/BioSPICE Optimization Modules and the study of regulatory motifs.
Abhishek Agrawal
website | email

Graduate: Model Database Project
Harish Dharuri
website | email

Research Assistant: Senior Model Curator working on the biomodels.net repository.
Melissa McCormick website | email

REU Student: Network Evolution Project, evolution of oscillatory networks
Darren Roblyer
website | email

REU Student: Use of Analog Computing to simulate biological signaling networks.
Cameron Wellock
website | email

DARPA Project. Responsible for the development of the OAA-SBW bridge, the SBW-Matlab Interface and Dashboard interfacing.
Klaus Maier
website | email

Student: Developing software for Gillespie and Langevin simulations in cellular networks. Implementing software to carry out Frequency Analysis on cellular networks. Studying how networks respond to different frequency inputs, how noise is transmitted through networks.
 
sysbio/labmembers.txt · Last modified: 2008/10/15 20:29 (external edit)
 

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