Computational Systems Biology
Sauro Lab
University of Washington
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What is SBW 
Research Impact 
Published Papers 
Lab Members 
Available Positions 
CSB Links 
Courses 
Student Projects 
 
 
 
Software Downloads:

1. SBW
2. JDesigner
3. Jarnac
4. WinSCAMP
5. Matlab Interface
6. Optimization
6. Bifurcation
 
maintained by Frank Bergmann
 
 
 

Student Projects

2007-2008

Alex Bratt Engineering Robust Gene Regulatory Networks for Synthetic Biology

2008-2009

Alec Nielsen Ribosomal Binding Site Measurements and Translation Rate Standardization

Charles Watts Ordering Rules in Stoichiometric Matrices to find Meaningful Conservation Laws

James Athappilly Evaluating Flash as a Platform on which to Build Web Based Pathway Modeling Tools

2009-2010

Si Yuan Shen SBML2TikZ: Generating Vector Graphics Script for the Systems Biology Markup Language

Jee Hoon Jang A Noninvasive, Real-time in vivo Tool for Monitoring Glycolysis

Bennett Ng Investigating the optimal distribution of feedback controls in biochemical networks.

Future Project Ideas

Wet-Lab Projects
  1. Predict the evolutionary half-life of a synthetic circuit knowing the initial expression level.
  2. Evolving a circuit to express high levels of a small molecule.
  3. Build a 1ml chemostat and use it to do controlled synthetic biology experiments.
Computational Projects
 
studentprojects.txt · Last modified: 2010/08/27 14:15 by hsauro
 

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